Tag Archives: Genomic Biomarkers

EMA publishes a reflection paper on methodological issues associated with pharmacgenomic biomarkers

As the number of available techniques to facilitate the study of human genomics has led to an exponential increase in investigation into genomic bio markersthe diagnosis of specific diseases. The AMA has decided that a guidance would be required to assist companies in implementing these technologies into clinical drug development.

These techniques are frequently used patient selection stratification or treatment strategies of patient groups, and the EMA is concerned the appropriate steps are not been taken hence the publication of this guidance.

excerpt from guidance

full text here

The availability of techniques that facilitate study of the human genome has led to an exponential increase in investigation into genomic biomarkers (GBMs) for diagnosis of specific diseases, as a marker of response to treatment or of prognosis. Theoretically genomic BMs should offer the advantage of improved specificity and reduction of heterogeneity that is an integral part of phenotypic population grouping. This is very attractive in drug development because of their potential ability to reduce drug attrition and to reduce overall developmental costs, that are achieved through improved understanding of the mechanism of drug action, predict adverse events to individual drugs or as a group effect (e.g. CYP poor metabolisers), and use of novel development strategies in pre-clinical and clinical phases.
In clinical drug development, GBMs may aid and influence a wide range of areas: patient selection, stratification of treatment strategies or patient groups, early evaluation of treatment effect including adverse reactions, and prognosis. There is opportunity for the GBMs to be used for pre-defined subgroup analysis or to enable novel trial designs that might not be possible otherwise due to heterogeneity of clinical characteristics.1,2 GBMs could also play a valuable role in the risk management strategies including risk minimisation by aiding a priori identification of patients susceptible to develop severe adverse effects (e.g. HLA B*- 5701 and use of Abacavir).
While a number of these aspects are discussed in many publications in the recent years, specific aspects relating to drug development and discussion on regulatory considerations have lagged behind. The intention of this paper is therefore to provide an evidence based consideration of GBM related issues from a regulatory viewpoint. Mention is also made of co-development of a GBM diagnostic test for use with a medicinal product.
The principles established in the reflection paper are based on the experiences gained from the evaluation of dossiers within the EU regulatory processes —including marketing authorisation applications reviewed by CHMP, the scientific advice documents and additionally, the voluntary genomic data submission meetings (briefing meetings) at the Pharmacogenomic Working party (PGWP) over the last several years. It is expected that these principles guide both industry and the assessors in the evaluation of such biomarkers in relation to the qualification process in the context of clinical development (BM qualification in EU) and the assessment of benefit: risk balance of medicinal products or selection of the relevant target population. The paper should also be read in conjunction with other relevant guidelines listed at the end of the documents under section “Other aspects”.
Development of GBMs and diagnostic tests may involve additional development of tests (companion diagnostics) or specific kits (platforms) to detect for the presence or absence of the GBM. Issues relating to these are outside the scope of this paper but a short discussion is included. The readers are referred to appropriate guidelines/ papers for details (see section on other aspects).

FDA Publish Guidance on E16 Biomarkers Related of Drug or Biotechnology Product Development Context, Structure and Format of Qualification Submissions

FDA Publish Guidance on E16 Biomarkers Related of Drug or Biotechnology Product Development Context, Structure and Format of Qualification Submissions

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The guidance describes recommendations regarding context, structure and format of regulatory submissions for qualification of genomic biomarkers (as defined in ICH E15 3). Qualification is a conclusion that, within the stated context of use, the results of assessment with a biomarker canbe relied upon to adequately reflect a biological process, response, or event, and support use of the biomarker during drug or biotechnology product development, ranging from discovery through postapproval. A biomarker qualification application might be submitted to regulatory authorities if the biomarker directly or indirectly helps in regulatory decision-making.

The objective of the guidance is to create a harmonized recommended structure for biomarker qualification applications that will foster consistency of applications across regions and facilitate discussions with and among regulatory authorities. It will also reduce the burden on sponsors as a harmonized format will be recommended for use across all ICH regulatory regions. It is also expected that the proposed document format will facilitate incorporation of biomarker data into specific product-related applications. Biomarker qualification can take place at any time during drug or biotechnology product development, ranging from discovery through postapproval. For those instances where it is appropriate, general guidance for inclusion of biomarker qualification data into the Common Technical Document for the Registration of Pharmaceuticals for Human Use (CTD) format for marketing authorization applications is provided in this document. The use of the CTD format would be considered appropriate when biomarker data are submitted as part of a new drug application (NDA), a biologics license application (BLA), a market authorization application (MAA), or other postapproval regulatory procedures, or upon request by the regulatory authorities.

The use of biomarkers has the potential to facilitate the availability of safer and more effective drug or biotechnology products, to guide dose selection, and to enhance their benefit-risk profile. This guidance is based on previous experiences with submissions containing biomarker data in the various regions. These submissions have been either stand-alone biomarker qualification applications or a component of medicinal product-related regulatory process marketing applications (NDAs/BLAs/MAAs). The development of a consistent format for submission of biomarker data will facilitate easy review and exchange of assessments between regions.


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Damien Bové is THE Drug Development and Regulatory Consultant (pharmaceutical or biotechnology), I work with my clients to define a drug development target, define a drug development strategy, define a regulatory strategy or define a commercial strategy. Our clients are generally raising funds or looking to license out their technology and we help them achieve it. If you want to know more don’t hesitate to get in touch.

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EMA Publishes Reflection Paper on Biomarkers in Clinical Development and Patient Selection

EMA Publishes Reflection Paper on Biomarkers in Clinical Development and Patient Selection

Full Text Here

The availability of techniques that facilitate study of the human genome has led to an exponential increase in investigation into genomic biomarkers (GBMs) for diagnosis of specific diseases, as a marker of response to treatment or of prognosis. Theoretically genomic BMs should offer the advantage of improved specificity and reduction of heterogeneity that is an integral part of phenotypic population grouping. This is very attractive in drug development because of their potential ability to reduce drug attrition and to reduce overall developmental costs, that are achieved through improved understanding of the mechanism of drug action, predict adverse events to individual drugs or as a group effect (e.g. CYP poor metabolisers), and use of novel development strategies in pre-clinical and clinical phases.

In clinical drug development, GBMs may aid and influence a wide range of areas: patient selection, stratification of treatment strategies or patient groups, early evaluation of treatment effect including adverse reactions, and prognosis. There is opportunity for the GBMs to be used for pre-defined subgroup analysis or to enable novel trial designs that might not be possible otherwise due to heterogeneity of clinical characteristics.1,2 GBMs could also play a valuable role in the risk management strategies including risk minimisation by aiding a priori identification of patients susceptible to develop severe adverse effects (e.g. HLA B*- 5701 and use of Abacavir).

While a number of these aspects are discussed in many publications in the recent years, specific aspects relating to drug development and discussion on regulatory considerations have lagged behind. The intention of this paper is therefore to provide an evidence based consideration of GBM related issues from a regulatory viewpoint. Mention is also made of co-development of a GBM diagnostic test for use with a medicinal product.

The principles established in the reflection paper are based on the experiences gained from the evaluation of dossiers within the EU regulatory processes —including marketing authorisation applications reviewed by CHMP, the scientific advice documents and additionally, the voluntary genomic data submission meetings (briefing meetings) at the Pharmacogenomic Working party (PGWP) over the last several years. It is expected that these principles guide both industry and the assessors in the evaluation of such biomarkers in relation to the qualification process in the context of clinical development (BM qualification in EU) and the assessment of benefit: risk balance of medicinal products or selection of the relevant target population. The paper should also be read in conjunction with other relevant guidelines listed at the end of the documents under section “Other aspects”.
Development of GBMs and diagnostic tests may involve additional development of tests (companion diagnostics) or specific kits (platforms) to detect for the presence or absence of the GBM. Issues relating to these are outside the scope of this paper but a short discussion is included. The readers are referred to appropriate guidelines/ papers for details (see section on other aspects).


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Damien Bové is THE Drug Development and Regulatory Consultant (pharmaceutical or biotechnology), I work with my clients to define a drug development target, define a drug development strategy, define a regulatory strategy or define a commercial strategy. Our clients are generally raising funds or looking to license out their technology and we help them achieve it. If you want to know more don’t hesitate to get in touch.

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“Please note that the pages on this website are designed to provide you with general information only. We make no warranties, representations or undertakings about any of its content. This includes the completeness, accuracy and fitness for any particular purpose, or the content of any third party site referred to or accessed through it. You are personally responsible for ensuring that the information is correct and we will not be held liable or accountable for any mistakes that occur.”

EMA, the European Drug Regulator Published Draft Reflection Paper on the Co-development of Pharmacogenomic Biomarkers and Assays in the Context of Drug Development.

EMA, the European Drug Regulator Published Draft Reflection Paper on the Co-development of Pharmacogenomic Biomarkers and Assays in the Context of Drug Development.

Full Text Here

The increasing knowledge of variation within the human genome is being used for the development of34 personalised and stratified medicine, with the aims of decreasing the number of adverse drug reactions and increasing the efficacy of drug therapy. Significant pharmacogenomic research has focused on understanding the molecular mechanisms underlying certain adverse drug reactions and on recognising biomarkers (BMs) that identify individuals at risk. A genomic biomarker (in this document referred to as PGBM) is a measurable DNA and/or RNA characteristic that is an indicator of normal biologic processes, pathogenic processes, and/or response to therapeutic or other interventions. The co-development of drugs and PGBMs may open new and often contentious issues: they need to be addressed in the different contexts of PGBM use, moving progressively from PGBM discovery to PGBM use in non-clinical phases and finally to clinical phases of drug development. An individual assay implies a specific test method, reagents and platform which are developed and validated together for the detection, choice and measurement of specific PGBMs. The assay may be subject to performance evaluation during a qualification process independently of a specific drug under development consideration. The level of scientific stringency applied to the assay will depend on the knowledge accumulated about the PGBM and the drug(s) under consideration, as well as the implication of its use. It is recognised that for well established PGBMs relevant to drug developments such as the CYP 450 polymorphic enzymes, there are commercially available in vitro diagnostic medical devices (IVDs). However, for discovery PGBMs, when initially used specifically in non-clinical toxicity or pharmacology studies, and planned to be used afterwards in the clinical drug development context, either customization of existing assays or new development of specific tests may be needed (e.g. assays to identify PGBMs based on new splicing iso-forms or new mRNA profiles.

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Damien Bové is THE Drug Development and Regulatory Consultant (pharmaceutical or biotechnology), I work with my clients to define a drug development target, define a drug development strategy, define a regulatory strategy or define a commercial strategy. Our clients are generally raising funds or looking to license out their technology and we help them achieve it. If you want to know more don’t hesitate to get in touch.

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Sign up for the most value add free newsource you can get for free. We spend a huge amount of time and effort monitoring the main drug / device regulators websites for changes in the regulatory environment, and capture between 20 and 40 new regulations, rules and initiatives each month, and summaries them in a fantastic FREE monthly Regulatory and Market Round Up. You can Un-Subscribe at any time and we don not share your details with anybody. You can’t afford to miss out on this service. Just fill in the form below.

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“Please note that the pages on this website are designed to provide you with general information only. We make no warranties, representations or undertakings about any of its content. This includes the completeness, accuracy and fitness for any particular purpose, or the content of any third party site referred to or accessed through it. You are personally responsible for ensuring that the information is correct and we will not be held liable or accountable for any mistakes that occur.”

Drug Regulations, EMEA publishes ICH E16 – Genomic Biomarkers for Drug Responses

Drug Regulators, EMEA, publish ICH guidance on Genomic Biomarkers Related to Drug Response – For Comment

The EMEA has published “ICH Topic E16 Genomic Biomarkers Related to Drug Response: Context, Structure and Format of Qualification Submissions”

Objective of Guideline

The guideline describes recommendations regarding context, structure, and format of regulatory submissions for qualification of genomic biomarkers, as defined in ICH E15. Biomarker qualification has not been covered in any ICH guideline. Qualification is a conclusion that the biomarker data submitted support use of the biomarker in drug discovery, development or post-approval and, where appropriate, in regulatory decision-making. The objective of the guideline is to create a harmonized structure for the qualification of genomic biomarkers that will foster consistency of applications across regions and facilitate joint discussions with and among regulatory authorities.

Background

The use of biomarkers in drug discovery, development and post-approval has the potential to facilitate development of safer and more effective medicines, to guide dose selection and to enhance the benefit-risk profile of approved medicines.

Scope

The scope of this guideline is the context, structure, and format of qualification submissions for clinical and non-clinical genomic biomarkers related to drug response including translational medicine approaches, pharmacokinetics, pharmacodynamics, efficacy and safety aspects. This guideline covers genomic biomarkers used singly or in combination with other genomic biomarkers or in combination with non-genomic biomarkers. It does not cover non-genomic biomarkers; however, it is anticipated that many of the principles described in this document might be applicable to other biomarker categories (e.g., proteomics) and other qualification contexts not associated with drug response.

General Principles

The proposed context of use (hereinafter referred to as “context”) of a genomic biomarker should determine the data supporting its qualification. Therefore, the relevant context should be clearly detailed in the submission package. Reference should be made to the specific use of the genomic biomarker in drug development. The format of the data for qualifying a genomic biomarker can vary significantly depending on the context. It is therefore only possible to provide general guidelines on data format for a genomic biomarker qualification submission.

Structure of Genomic Biomarker Qualification Submissions

Section 1: Regional Administrative Information

This section should contain documents specific to each region, for example, application forms and/or cover letter. The content and format of this section can be specified by the relevant regulatory authorities.

Section 2: Summaries

Introduction:

This section should be concise. It can include a description of the disease and/or experimental setting, the nature of the genomic biomarker (e.g., Single Nucleotide Polymorphisms (SNPs) and Copy Number Variation (CNV)) and provide a rationale for its use in drug discovery, development or post-approval studies.

Context

The elements describing the context for a biomarker should include (i) the general area, (ii) the specific biomarker use, and (iii) the critical parameters which define when and how the biomarker should be used.

  • General Are (including, but not limited to)
    • Non-Clinical
      • Pharmacology
      • Safety and Toxicology
    • Clinical
      • Pharmacology
      • Safety
      • Efficacy
  • Specific Biomarker Use (including, but not limited to)
    • Patient selection
      • Inclusion/Exclusion
      • Trial enrichment or stratification
    • Assessment of mechanism of action
      • Mechanism of drug action
      • Mechanism of therapetuic effect
      • Mechanism of toxicity/adverse reaction
    • Dose optimization
      • No observed effect level (NOEL) in animal models
      • No observed adverse effect level (NOAEL) in animal models
      • Algorithm-based dose determination (qualititative algorithmic dosing)
      • Determination of likley dose range
    • Response Monitoring
      • Monitoring drug safety
      • Monitoring drug efficacy
    • Toxicity/Adverse reactions/Risk minimization
      • Indicating/predicting toxicity/adverse reactions
  • Critical Parameters of Context Description (including, but not limited to)
    • Drug-secofo9c use
    • Disease diagnosis, prognosis, or stage
    • Assay specifications
    • Tissue or physiological.pathological process addressed
    • Species
    • Demographics including ancestry and/or geographic origin
    • Use in clinical trials

A biomarker could have more than one context, including the general area and/or specific use within a single submission (e.g., non-clinical and clinical predictive biomarker(s)).

Non-clinical safety

biomarkers for tox/safety examples given

Clinical Pharmacology/Drug Metabolism

biomarkers for clinical pharmacology/drug metabolism examples given.

Clinical Safety

Biomarker use in clinical safety examples given.

Methodology and results

This section should include a summary of nonclinical or clinical studies, including integrated analysis of the genomic biomarker qualification studies and individual study synopses.

Section 3: Quality

Drug quality and manufacturing data would in general not be included in a biomarker ualification submission independent from an NDA or MAA.

Sections 4: (Nonclinical) and 5 (clinical): Study Reports

In this section, full study reports for biomarker qualification should be provided, and raw data could be made available to the regulatory agency upon request. Information on compliance with Good Laboratory Practices (GLP) or Good Clinical Practices (GCP) can be included in these sections. This guideline suggests that, where appropriate, the study reports can follow relevant ICH guidelines (e.g., E3, M4E, M4S) for their preparation.

If you would like more detail in this area please get in touch with Damien Bové damien.bove@idaconsultants.com

Damien Bové works as a drug development consultant (pharmaceutical or biotechnology) and regulatory consultant, we work with our clients to define a drug development target, define a drug development strategy, define a regulatory strategy or define a commercial strategy. Our clients are generally raising funds or looking to license out their technology and we help them achieve it. If you want to know more don’t hesitate to get in touch.

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